In search of a mutational hotspot.

Abstract:

In vitro selection was used to define sequence contexts that ...
In vitro selection was used to define sequence contexts that significantly enhanced the mutagenic potential of 7, 8-dihydro-8-oxoguanine (8-oxoG). Contexts that simultaneously reduced the efficiency of 8-oxoG cleavage by formamidopyrimidine DNA N-glycosylase and increased the efficiency of misincorporating A opposite the lesion by DNA polymerase were isolated from a pool of 4(8) random octanucleotide sequences. Kinetic analysis showed that the combined effects of poor repair and high miscoding resulted in 10(2)- to 10(3)-fold increase in the mutagenic potential of 8-oxoG. Furthermore, the isolated sequence contexts correlated strongly with G --> T transversion hotspots in spontaneous mutational spectra reported for the Escherichia coli lacI and human p53 and factor IX genes. We present an example directly linking the interplay between DNA repair and replication to a "high risk sequence" for base substitution.

Polymerases:

Topics:

Mutational Analysis, Modulators/Inhibitors, Kinetic Parameters, Nucleotide Analogs / Template Lesions, Fidelity, Accessory Proteins/Complexes, Nucleotide Incorporation

Status:

new topics/pols set partial results complete validated

Results:

Polymerase Reference Property Result Context
T4 D112AE114A In search of a mutational hotspot. KM 0.911uM Reaction: Nucleotide incorporation; Substrate: dCTP
T4 D112AE114A In search of a mutational hotspot. KM 0.32uM Reaction: Nucleotide incorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 1.01uM Reaction: Nucleotide incorporation; Substrate: dCTP
T4 D112AE114A In search of a mutational hotspot. KM 8.24uM Reaction: Nucleotide incorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 0.18uM Reaction: Nucleotide incorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 0.34uM Reaction: Misincorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 1.38uM Reaction: Misincorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 8.87uM Reaction: Misincorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 0.11uM Reaction: Misincorporation; Substrate: dCTP
T4 D112AE114A In search of a mutational hotspot. KM 0.332uM Reaction: Misincorporation; Substrate: dCTP
T4 D112AE114A In search of a mutational hotspot. KM 0.102uM Reaction: Nucleotide incorporation; Substrate: dATP
T4 D112AE114A In search of a mutational hotspot. KM 0.683uM Reaction: Misincorporation; Substrate: dCTP

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