Dpo4 |
Y |
Archaeon |
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE |
2BQR |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DGTP |
2W9A |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs |
3GIJ |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III |
1A5T |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair |
3GIK |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair |
3GIL |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair |
3GIM |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation |
3GII |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA/DNA COMPLEX |
1BPX |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Crystal Structure of a DinB Homolog (DBH) Lesion Bypass DNA Polymerase Catalytic Fragment from Sulfolobus solfataricus |
1IM4 |
no |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
STOFFEL FRAGMENT OF TAQ DNA POLYMERASE I |
1JXE |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Binary complex of a DNA polymerase lambda loop mutant |
3MGH |
yes |
rcsb pdbsum |
DTok |
B |
Archaeon |
CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM |
1D5A |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
HIV-1 K103N Reverse Transcriptase in Complex with TMC125 |
3MED |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
HIV-1 K103N Reverse Transcriptase in Complex with TMC278 |
3MEG |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase in Complex with TMC278 |
3MEE |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. |
1NK8 |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP. |
1NKB |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP. |
1NKC |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
SOLUTION STRUCTURE OF THE THETA SUBUNIT OF DNA POLYMERASE III |
1DU2 |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of chi and psi subunit heterodimer from DNA POL III |
1EM8 |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. |
1NKE |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NK7 |
yes |
rcsb pdbsum |
HHV1 |
B |
Virus/Phage |
CRYSTAL STRUCTURE OF HERPES SIMPLEX UL42 BOUND TO THE C-TERMINUS OF HSV POL |
1DML |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase in Complex with TMC125 |
3MEC |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA |
1DK2 |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Polymerase |
2IMW |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
Extension of an adenine-8oxoguanine mismatch |
1U4B |
yes |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP |
1HUO |
yes |
rcsb pdbsum |
RB69 D222AD327A |
B |
Virus/Phage |
Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase |
1IG9 |
yes |
rcsb pdbsum |
RB69 D222AD327A |
B |
Virus/Phage |
High-Resolution Structure of Apo RB69 DNA Polymerase |
1IH7 |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate |
2PXI |
yes |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA |
2R8J |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap |
2IA6 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap |
2IBK |
no |
rcsb pdbsum |
Mmu Pol mu |
X |
Eukaryote |
Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide |
2IHM |
yes |
rcsb pdbsum |
Taq Pol III |
C |
Eubacterium |
Insights into the Replisome from the Crystral Structure of the Ternary Complex of the Eubacterial DNA Polymerase III alpha-subunit |
3E0D |
yes |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3-GTG INTRASTRAND CROSS-LINK |
2WTF |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 |
3CFR |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1 |
3CFP |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NJX |
yes |
rcsb pdbsum |
Human Pol alpha |
B |
Eukaryote |
Minimized Average NMR Structure of the Zinc Finger Domain of Human DNA Polymerase-alpha |
1K18 |
no |
rcsb pdbsum |
Human Pol alpha |
B |
Eukaryote |
NMR Structures of the Zinc Finger Domain of Human DNA Polymerase-alpha |
1K0P |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide |
1SL0 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP |
1MQ2 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS |
2UVW |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING |
2JEG |
yes |
rcsb pdbsum |
RB69 Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine |
3LZJ |
yes |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR |
1ZQU |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit |
1NJG |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
E. COLI DNA POLYMERASE BETA SUBUNIT |
1MMI |
no |
rcsb pdbsum |
RB69 Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine |
3LZI |
yes |
rcsb pdbsum |
HHV5 |
B |
Virus/Phage |
Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54 |
1YYP |
no |
rcsb pdbsum |
Klentaq2 |
A |
Eubacterium |
Structure of Klenow fragment of Taq polymerase in complex with an abasic site |
3LWL |
yes |
rcsb pdbsum |
Klentaq2 |
A |
Eubacterium |
Structure of the large fragment of thermus aquaticus DNA polymerase I in complex with a blunt-ended DNA and ddATP |
3LWM |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP |
1MQ3 |
yes |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) |
1ZQW |
no |
rcsb pdbsum |
Taq Pol III |
C |
Eubacterium |
Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III |
2HPI |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) |
1ZQX |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III |
2HNH |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of the catalytic alpha subunit of E. Coli replicative DNA polymerase III |
2HQA |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Solution Structure of the Ubiquitin-Binding Motif of Human Polymerase Iota |
2KHU |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
A CONSERVED PROTEIN BINDING-SITE ON BACTERIAL SLIDING CLAMPS |
1OK7 |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR) |
1NOM |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase with inhibitor |
3LP2 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase with inhibitor |
3LP0 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase with inhibitor |
3LP1 |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NK4 |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA |
1Q9Y |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NK0 |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NJZ |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Solution Structure of the theta subunit of DNA polymerase III from E. coli |
2AE9 |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE |
1TVA |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION |
1RYS |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NK5 |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NJY |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate |
3JPT |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NK6 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate |
3JPS |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule |
1RZT |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift |
1S10 |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with dFdCTP |
3MDC |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate |
3JPR |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakaraensis KOD1 |
1WNS |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with araC |
3MDA |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate |
3JPQ |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
DPO4 with GT mismatch |
1S97 |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
X-ray crystal structure of oxidized XRCC1 bound to DNA pol beta Palm thumb domain |
3LQC |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate |
3JPP |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide |
3D1F |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate |
3JPO |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase in complex with N1-butyl pyrimidinedione non-nucleoside inhibitor |
3LAN |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase in complex with N1-propyl pyrimidinedione non-nucleoside inhibitor |
3LAM |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate |
3JPN |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase in complex with N1-ethyl pyrimidinedione non-nucleoside inhibitor |
3LAL |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase in complex with N1-heterocycle pyrimidinedione non-nucleoside inhibitor |
3LAK |
no |
rcsb pdbsum |
RB69 Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin |
3NAE |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer |
3KK3 |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase with aminopyrimidine inhibitor 2 |
3NBP |
no |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
STRUCTURE OF TAQ DNA POLYMERASE |
1TAQ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site |
3KK2 |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site |
3KK1 |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA Polymerase Ternary Complex with dCTP at the Insertion Site. |
1T8E |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase in complex with DNA |
3KJV |
yes |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
DNA Polymerase Eta in Complex With a cis-syn Thymidine Dimer |
3MFI |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Insight in DNA Replication: The crystal structure of DNA Polymerase B1 from the archaeon Sulfolobus solfataricus |
1S5J |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
X-ray crystal structure of reduced XRCC1 bound to DNA pol beta catalytic domain |
3K75 |
no |
rcsb pdbsum |
HIV RT K65R |
RT |
Virus/Phage |
K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with tenofovir-diphosphate as the incoming nucleotide substrate |
3JSM |
yes |
rcsb pdbsum |
HIV RT K65R |
RT |
Virus/Phage |
K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with DATP as the incoming nucleotide substrate |
3JYT |
yes |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP |
3M8S |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
DNA POLYMERASE FROM BACTERIOPHAGE RB69 |
1WAJ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase with the Inhibitor beta-Thujaplicinol Bound at the RNase H Active Site |
3IG1 |
no |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP |
2OZS |
yes |
rcsb pdbsum |
Human Pol gamma |
A |
Eukaryote |
Crystal structure of Pol gB delta-I4. |
3IKL |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
STRUCTURAL BASIS OF ASYMMETRY IN THE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE HETERODIMER |
3HVT |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide. |
1X9W |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with a triazole derived NNRTI |
2RKI |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
Crystal structure of a trypanocidal 4,4'-Bis(imidazolinylamino)diphenylamine bound to DNA |
3FSI |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV reverse transcriptase in complex with inhibitor 7e (NNRTI) |
2RF2 |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
Co(III)bleomycinB2 bound to d(ATTAGTTATAACTAAT) complexed with MMLV RT catalytic fragment |
2R2S |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
Co(III)bleomycinB2 bithiazole/C-terminal tail domain bound to d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment |
2R2U |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment |
2R2T |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
d(ATTAGTTATAACTAAT) complexed with MMLV RT catalytic fragment |
2R2R |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal Structure of Y188C Mutant HIV-1 Reverse Transcriptase in Complex with GW420867X. |
2OPS |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal Structure of K101E Mutant HIV-1 Reverse Transcriptase in Complex with GW420867X. |
2OPR |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal Structure of L100I Mutant HIV-1 Reverse Transcriptase in Complex with GW420867X. |
2OPQ |
no |
rcsb pdbsum |
HIV RT K103NY181C |
RT |
Virus/Phage |
Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with ATP |
2IAJ |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, MINIMIZED AVERAGE STRUCTURE |
1BNO |
no |
rcsb pdbsum |
HIV RT K103NY181C |
RT |
Virus/Phage |
Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with Nonnucleoside Inhibitor HBY 097 |
2IC3 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with GW420867X. |
2OPP |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase (RT) in complex with DHBNH, an RNASE H inhibitor |
2I5J |
no |
rcsb pdbsum |
TGO |
B |
Archaeon |
CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA |
2XHB |
yes |
rcsb pdbsum |
HIV RT E138K |
RT |
Virus/Phage |
Crystal Structure of E138K Mutant HIV-1 Reverse Transcriptase in Complex with PETT-2 |
2HNZ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF UK-453061 BOUND TO HIV-1 REVERSE TRANSCRIPTASE (WILD-TYPE). |
2WON |
no |
rcsb pdbsum |
HIV RT K101E |
RT |
Virus/Phage |
Crystal Structure of K101E Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine |
2HND |
no |
rcsb pdbsum |
HIV RT E138K |
RT |
Virus/Phage |
Crystal Structure of E138K Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine |
2HNY |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX |
2HMI |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus |
2FVS |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus |
2FVR |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus |
2FVQ |
yes |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF UK-453061 BOUND TO HIV-1 REVERSE TRANSCRIPTASE (K103N). |
2WOM |
no |
rcsb pdbsum |
Pho pol D |
D |
Archaeon |
N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase |
2KXE |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus |
2FVP |
yes |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP |
3M8R |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
d(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment |
2FJW |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
RT29 bound to D(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment |
2FJX |
yes |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
RT29 Bound to D(CTTAATTCGAATTAAG) in complex with MMLV RT Catalytic Fragment |
2FJV |
yes |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
DNA Polymerase Eta in Complex With Undamaged DNA |
3MFH |
yes |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM |
2BPC |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase (RT) in complex with R221239 |
2BE2 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase (RT) in complex with JANSSEN-R157208 |
2BAN |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
d(CTTAATTCGAATTAAG) complexed with Moloney Murine Leukemia Virus Reverse Transcriptase catalytic fragment |
1ZTW |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase (RT) in complex with JANSSEN-R165481 |
2B5J |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
Netropsin bound to d(CTTAATTCGAATTAAG) in complex with MMLV RT catalytic fragment |
1ZTT |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 RT/9-CL TIBO |
1TVR |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIGH RESOLUTION STRUCTURES OF HIV-1 RT FROM FOUR RT-INHIBITOR COMPLEXES |
1VRU |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIGH RESOLUTION STRUCTURES OF HIV-1 RT FROM FOUR RT-INHIBITOR COMPLEXES |
1VRT |
no |
rcsb pdbsum |
HIV RT Y181C |
RT |
Virus/Phage |
TYR 181 CYS HIV-1 RT/8-CL TIBO |
1UWB |
no |
rcsb pdbsum |
Taq Pol III |
C |
Eubacterium |
Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III |
2HPM |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of hiv-1 reverse transcriptase in complex with gw450557 |
1TL3 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GW429576 |
1TKZ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GW451211 |
1TL1 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GW490745 |
1TKX |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
|
2bpf |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GW426318 |
1TKT |
no |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
Yeast DNA polymerase eta extending from an 8-oxoG lesion |
3OHB |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate |
1T05 |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P) |
1T03 |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R185545 |
1SUQ |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R165335 |
1SV5 |
no |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion |
3OHA |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R120394. |
1S9G |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R129385 |
1S9E |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R147681 |
1S6Q |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R100943 |
1S6P |
no |
rcsb pdbsum |
HIV RT V106A |
RT |
Virus/Phage |
Crystal structure of V106A mutant HIV-1 reverse transcriptase in complex with UC-781 |
1S1W |
no |
rcsb pdbsum |
HIV RT V108I |
RT |
Virus/Phage |
Crystal structure of V108I mutant HIV-1 reverse transcriptase in complex with nevirapine |
1S1X |
no |
rcsb pdbsum |
HIV RT L100I |
RT |
Virus/Phage |
Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with TNK-651 |
1S1V |
no |
rcsb pdbsum |
HIV RT L100I |
RT |
Virus/Phage |
Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with nevirapine |
1S1U |
no |
rcsb pdbsum |
HIV RT L100I |
RT |
Virus/Phage |
Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with UC-781 |
1S1T |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
The crystal structure of the monomeric reverse transcriptase from Moloney murine leukemia virus |
1RW3 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
MECHANISM OF INHIBITION OF HIV-1 REVERSE TRANSCRIPTASE BY NON-NUCLEOSIDE INHIBITORS |
1RTJ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIGH RESOLUTION STRUCTURES OF HIV-1 RT FROM FOUR RT-INHIBITOR COMPLEXES |
1RTI |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIGH RESOLUTION STRUCTURES OF HIV-1 RT FROM FOUR RT-INHIBITOR COMPLEXES |
1RTH |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC84 |
1RT7 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE |
1RTD |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC781 |
1RT4 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC38 |
1RT6 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC10 |
1RT5 |
no |
rcsb pdbsum |
TGO |
B |
Archaeon |
URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY. V93Q POLYMERASE VARIANT |
2VWK |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
AZT DRUG RESISTANT HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH 1051U91 |
1RT3 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH TNK-651 |
1RT2 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH MKC-442 |
1RT1 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE |
1REV |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms |
1R0A |
yes |
rcsb pdbsum |
HIV RT RNaseH omain |
RT |
Virus/Phage |
CRYSTALLOGRAPHIC ANALYSES OF AN ACTIVE HIV-1 RIBONUCLEASE H DOMAIN SHOW STRUCTURAL FEATURES THAT DISTINGUISH IT FROM THE INACTIVE FORM |
1RDH |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN |
1QAJ |
yes |
rcsb pdbsum |
HIV RT M184I |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF 3TC-RESISTANT M184I MUTANT OF HIV-1 REVERSE TRANSCRIPTASE |
1QE1 |
no |
rcsb pdbsum |
Human Pol epsilon |
B |
Eukaryote |
SOLUTION STRUCTURE OF AMINO TERMINAL DOMAIN OF HUMAN DNA POLYMERASE EPSILON SUBUNIT B |
2V6Z |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN |
1QAI |
yes |
rcsb pdbsum |
MMuLV RT N term R116A |
RT |
Virus/Phage |
Arginine 116 is Essential for Nucleic Acid Recognition by the Fingers Domain of Moloney Murine Leukemia Virus Reverse Transcriptase |
1NND |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH 739W94 |
1JLQ |
no |
rcsb pdbsum |
HIV RT C280S,Q258C |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) |
1N6Q |
yes |
rcsb pdbsum |
HIV RT C280S,Q258C |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P) |
1N5Y |
yes |
rcsb pdbsum |
HIV2 RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-2 REVERSE TRANSCRIPTASE |
1MU2 |
no |
rcsb pdbsum |
HIV RT M41LD67N/K70R/M184V/T215Y |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF A MUTANT HIV-1 REVERSE TRANSCRIPTASE (RTMQ+M184V: M41L/D67N/K70R/M184V/T215Y) IN COMPLEX WITH NEVIRAPINE |
1LWF |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES |
4BDP |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
Bacillus stearothermophilus (newly identified strain as yet unnamed) DNA polymerase fragment |
1BDP |
no |
rcsb pdbsum |
HIV RT M41LT215Y |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF M41L/T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE (RTMN) IN COMPLEX WITH NEVIRAPINE |
1LWE |
no |
rcsb pdbsum |
HIV RT T215Y |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH 1051U91 |
1LW2 |
no |
rcsb pdbsum |
HIV RT M184V |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF M184V MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE |
1LWC |
no |
rcsb pdbsum |
HIV RT T215Y |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE |
1LW0 |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH UC-781 |
1JLG |
no |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB |
1BGX |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE |
1JLF |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE |
1JLE |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM |
1BPB |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-2 |
1JLC |
no |
rcsb pdbsum |
Ssp Pol III |
C |
Eubacterium |
1.95 Angstrom Crystal Structure of a dnaE Intein Precursor from Synechocystis Sp. Pcc 6803 |
1ZDE |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-651 |
1JLA |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE |
1JLB |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM |
1BPD |
no |
rcsb pdbsum |
HIV RT Y188C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ) |
1JKH |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA; EVIDENCE FOR A COMMON POLYMERASE MECHANISM |
1BPE |
no |
rcsb pdbsum |
Human Pol mu |
X |
Eukaryote |
The solution structure of the BRCT domain from human polymerase reveals homology with the TdT BRCT domain |
2HTF |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP |
1BPY |
yes |
rcsb pdbsum |
HIV RT M184I |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER |
1J5O |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP. |
2J6S |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA |
1BPZ |
yes |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex |
1KRP |
no |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
DNA POLYMERASE FROM BACTERIOPHAGE RB69 |
1WAF |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 Reverse Transcriptase in Complex with the Inhibitor MSC194 |
1IKY |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
K103N Mutant HIV-1 Reverse Transcriptase in Complex with the Inhibitor PNU142721 |
1IKX |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
Wild Type HIV-1 Reverse Transcriptase in Complex with Efavirenz |
1IKW |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
K103N Mutant HIV-1 Reverse Transcriptase in Complex with Efivarenz |
1IKV |
no |
rcsb pdbsum |
MMuLV RT N term |
A |
Virus/Phage |
CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE |
1I6J |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA |
1HYS |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT |
1HVU |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA |
1DK3 |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3' |
1D9F |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP. |
2J6U |
yes |
rcsb pdbsum |
HIV RT K103N, C280S |
RT |
Virus/Phage |
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 |
1HQU |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
E. coli Beta Sliding Clamp, 148-153 Ala Mutant |
3F1V |
no |
rcsb pdbsum |
HIV RT K103N, C280S |
RT |
Virus/Phage |
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 |
1HQE |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
Extension of a cytosine-8-oxoguanine base pair |
1U48 |
yes |
rcsb pdbsum |
HIV RT K103N, C280S |
RT |
Virus/Phage |
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 |
1HPZ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH THE NONNUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 ANGSTROMS RESOLUTION |
1HNI |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5 |
1J53 |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 |
1J54 |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex |
1JQJ |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
THE STRUCTURE OF UNLIGANDED REVERSE TRANSCRIPTASE FROM THE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 |
1HMV |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140) |
1JQL |
no |
rcsb pdbsum |
HIV RT N-term half |
RT |
Virus/Phage |
2.2 ANGSTROMS RESOLUTION STRUCTURE OF THE AMINO-TERMINAL HALF OF HIV-1 REVERSE TRANSCRIPTASE (FINGERS AND PALM SUBDOMAINS) |
1HAR |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING |
2JEF |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE |
1FKP |
no |
rcsb pdbsum |
HIV RT K103N |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ) |
1FKO |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ) |
1FK9 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH S-1153 |
1EP4 |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III |
1JR3 |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Crystal structure of archaeal family B DNA polymerase mutant |
1WN7 |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH THE INHIBITOR MSC204 |
1EET |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 |
1DLO |
no |
rcsb pdbsum |
MMuLV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN |
1D0E |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-6123 |
1C1C |
no |
rcsb pdbsum |
TGO |
B |
Archaeon |
URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY. |
2VWJ |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE |
1NJW |
yes |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX |
1KFS |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion |
1N48 |
yes |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GCA-186 |
1C1B |
no |
rcsb pdbsum |
Ssp Pol III |
C |
Eubacterium |
1.7 Angstrom Crystal Structure Of Post-Splicing Form of a dnaE Intein from Synechocystis Sp. Pcc 6803 |
1ZD7 |
no |
rcsb pdbsum |
Human Pol alpha |
B |
Eukaryote |
NMR Structures of the Zinc Finger Domain of Human DNA Polymerase-alpha |
1N5G |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH BM+50.0934 |
1C0U |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine |
3EPG |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of ESCHERICHIA coli DNA Polymerase II |
1Q8I |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH BM+21.1326 |
1C0T |
no |
rcsb pdbsum |
T4 |
B |
Virus/Phage |
T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K |
1NOZ |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Solution Structure of the Lyase Domain of Human DNA Polymerase Lambda |
1NZP |
no |
rcsb pdbsum |
HIV RT Y188L, C280S |
RT |
Virus/Phage |
TYR 188 LEU HIV-1 RT/HBY 097 |
1BQN |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING |
2JEI |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA |
1Q9X |
yes |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX |
1TAU |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 RT/HBY 097 |
1BQM |
no |
rcsb pdbsum |
Bka Pol III DELTA 1-227 DELTA 412-617 |
C |
Eubacterium |
DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP and Mn |
3F2C |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING |
2JEJ |
yes |
rcsb pdbsum |
Pfu |
B |
Archaeon |
CRYSTAL STRUCTURE OF DNA-DIRECTED DNA POLYMERASE |
2JGU |
no |
rcsb pdbsum |
Bka Pol III DELTA 1-227 DELTA 412-617 |
C |
Eubacterium |
DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP, Mn and Zn |
3F2D |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP. |
2J6T |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
cytosine-8-Oxoguanine base pair at the polymerase active site |
1U47 |
yes |
rcsb pdbsum |
DTok |
B |
Archaeon |
CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK |
1QQC |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Ternary complex of a DNA polymerase lambda loop mutant |
3MGI |
yes |
rcsb pdbsum |
9egN D141A/D143A |
B |
Archaeon |
DNA POLYMERASE FROM THERMOCOCCUS SP. 9ON-7 ARCHAEON |
1QHT |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION |
1RYR |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift |
1S0O |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MGCL2 (50 MILLIMOLAR) |
1ZQY |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (50 MILLIMOLAR) |
1ZQZ |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift |
1S0N |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase |
1S0M |
yes |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA |
1D8Y |
yes |
rcsb pdbsum |
TGO |
B |
Archaeon |
THERMOSTABLE B TYPE DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS |
1TGO |
no |
rcsb pdbsum |
Spn Pol III |
C |
Eubacterium |
Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution |
2AWA |
no |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
DNA POLYMERASE |
1KTQ |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3' |
1D9D |
yes |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex |
1KSP |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
solution structure of the theta subunit of escherichia coli DNA polymerase III in complex with the epsilon subunit |
2AXD |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
DPO with AT matched |
1S9F |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA Polymerase Complexed To DNA Primer/Template and ddATP |
1SKR |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template |
1SKS |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion |
3M9N |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis |
2AGQ |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template |
1SKW |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion |
3M9M |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP |
2POL |
no |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analog |
2OYQ |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN |
1T7P |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
Binary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template |
1SL1 |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template and an incoming nucleotide |
1SL2 |
no |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase ssDNA complex, monoclinic crystal form |
1XI1 |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analog |
2OZM |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Solution Structure of the C-Terminal 14 kDa Domain of the tau subunit from Escherichia coli DNA Polymerase III |
2AYA |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion site |
1TK0 |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation site |
1TK8 |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strand |
1TK5 |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site |
1TKD |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE |
1TV9 |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer template |
2P5G |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure of a small molecule inhibitor bound to a DNA sliding clamp |
3D1G |
no |
rcsb pdbsum |
Eco Pol IV |
Y |
Eubacterium |
COMPLEX OF BETA-CLAMP PROCESSIVITY FACTOR AND LITTLE FINGER DOMAIN OF POLIV |
1UNN |
no |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA |
1X9M |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog |
2P5O |
yes |
rcsb pdbsum |
T7 |
A |
Virus/Phage |
T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-CTP as the incoming nucleotide. |
1X9S |
yes |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase, orthorhombic crystal form, ssDNA complex |
1XHZ |
no |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA Polymerase, orthorhombic crystal form |
1XHX |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap |
1XSL |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate |
1XSP |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP |
1XSN |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
ATPgS Bound E. Coli Clamp Loader Complex |
1XXH |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Ternary Complex of hPoli with DNA and dCTP |
2ALZ |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
ADP Bound E. coli Clamp Loader Complex |
1XXI |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA |
2P66 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus |
1ZJM |
yes |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) |
1ZQV |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP |
1ZJN |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Na in the active site of DNA Polymerase lambda |
2PFN |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis |
2AGP |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis |
2AGO |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA Polymerase lambda in complex with DNA and dUPNPP |
2PFO |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dtmp |
2BCQ |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp |
2BCR |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dcmp |
2BCS |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA Polymerase lambda in complex with DNA and dCTP |
2PFP |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch |
2BCU |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp |
2BCV |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G) |
2FLP |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE |
2BQ3 |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal |
2PFQ |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE |
2BQU |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE |
2BR0 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 |
2C28 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 |
2C22 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 |
2C2D |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 |
2C2E |
yes |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION |
1QSL |
no |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase complexed with single-stranded DNA |
2PY5 |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 |
2C2R |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Ternary complex of hPoli with DNA and dCTP |
2DPI |
yes |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) |
2PYJ |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
structure of hPoli with DNA and dTTP |
2DPJ |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog |
2DTU |
no |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) |
2PYL |
yes |
rcsb pdbsum |
Human Pol eta |
Y |
Eukaryote |
Solution Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Y-Polymerase Eta |
2I5O |
no |
rcsb pdbsum |
Human Pol mu |
X |
Eukaryote |
Solution structure of BRCT domain of DNA polymerase mu |
2DUN |
no |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol |
2DY4 |
yes |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS |
1QSS |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Ternary complex of human DNA polymerase iota with DNA and dTTP |
2FLL |
yes |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Bacteriophage phi29 DNA polymerase bound to terminal protein |
2EX3 |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
binary complex of catalytic core of human DNA polymerase iota with DNA (template A) |
2FLN |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY |
2KFZ |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE |
2KFN |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site |
2FMP |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure and Funciton of Cyclized Versions of the Proofreading Exonuclease Subunit of E. coli DNA Polymerase III |
2GUI |
no |
rcsb pdbsum |
Phi29 |
B |
Virus/Phage |
Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex) |
2PZS |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Sodium in active site of DNA Polymerase Beta |
2FMQ |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase |
2R8G |
yes |
rcsb pdbsum |
HHV1 |
B |
Virus/Phage |
Crystal structure of the Herpes Simplex virus type 1 DNA polymerase |
2GV9 |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus |
2GWS |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase |
2R8H |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase |
2R8I |
yes |
rcsb pdbsum |
Human Pol kappa |
Y |
Eukaryote |
Crystal structure of PCNA in complex with DNA polymerase kappa fragment |
2ZVL |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Crystal structure of PCNA in complex with DNA polymerase iota fragment |
2ZVM |
no |
rcsb pdbsum |
Rat Pol beta |
X |
Eukaryote |
NUCLEOTIDYL TRANSFER MECHANISM OF MISMATCHED DNTP INCORPORATION BY DNA POLYMERASE B BY STRUCTURAL AND KINETIC ANALYSES |
2VAN |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base |
2I9G |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNA |
2V4Q |
yes |
rcsb pdbsum |
Sce Pol eta |
Y |
Eukaryote |
Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA |
2R8K |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure of the E. coli Pol III epsilon-Hot proofreading complex |
2IDO |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE |
2KZM |
no |
rcsb pdbsum |
Klenow fragment |
A |
Eubacterium |
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY |
2KZZ |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS |
2UVV |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms |
2RDI |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate |
2ISP |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms |
2RDJ |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS |
2UVR |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS |
2UVU |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
Adenine-8oxoguanine mismatch at the polymerase active site |
1U49 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH DGTP SKIPPING THE M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE CYTOSINE |
2V4R |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND |
2V9W |
no |
rcsb pdbsum |
HIV RT |
RT |
Virus/Phage |
HIV-1 RT with pyridone non-nucleoside inhibitor |
3FFI |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND |
2VA2 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND |
2VA3 |
yes |
rcsb pdbsum |
Human Pol kappa |
Y |
Eukaryote |
STRUCTURE AND ACTIVITY OF BYPASS SYNTHESIS BY HUMAN DNA POLYMERASE KAPPA OPPOSITE THE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE ADDUCT |
2W7P |
no |
rcsb pdbsum |
Human Pol kappa |
Y |
Eukaryote |
STRUCTURE AND ACTIVITY OF BYPASS SYNTHESIS BY HUMAN DNA POLYMERASE KAPPA OPPOSITE THE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE ADDUCT |
2W7O |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION |
2W8K |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION |
2W8L |
yes |
rcsb pdbsum |
Bst |
A |
Eubacterium |
BACILLUS STEAROTHERMOPHILUS (NEWLY IDENTIFIED STRAIN AS YET UNNAMED) DNA POLYMERASE FRAGMENT |
1XWL |
no |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
|
2BDP |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
BINARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA |
2W9B |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
DNA POLYMERASE I/DNA COMPLEX |
3BDP |
yes |
rcsb pdbsum |
Dbh |
Y |
Archaeon |
Post-insertion binary complex of Dbh DNA polymerase |
3BQ2 |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DTTP |
2W9C |
yes |
rcsb pdbsum |
Human Pol eta |
Y |
Eukaryote |
Crystal structure of PCNA in complex with DNA polymerase eta fragment |
2ZVK |
no |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Structure of a sliding clamp on DNA |
3BEP |
yes |
rcsb pdbsum |
Dbh |
Y |
Archaeon |
Pre-insertion binary complex of Dbh DNA polymerase |
3BQ0 |
yes |
rcsb pdbsum |
Dbh |
Y |
Archaeon |
Insertion ternary complex of Dbh DNA polymerase |
3BQ1 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site |
3C2K |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site |
3C2M |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site |
3C2L |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Structure of a ternary complex of the R517K Pol lambda mutant |
3C5G |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Structure of a binary complex of the R517A Pol lambda mutant |
3C5F |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
Ternary complex of the L415F mutant RB69 exo(-)polymerase |
3CQ8 |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP |
3EPI |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA |
3FDS |
no |
rcsb pdbsum |
Bka Pol III DELTA 1-227 DELTA 412-617 |
C |
Eubacterium |
DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP, Mg and Zn |
3F2B |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP |
3GDX |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
DNA synthesis across an abasic lesion by human DNA polymerase-iota |
3G6V |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position |
3G6X |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position |
3G6Y |
no |
rcsb pdbsum |
Sce Pol alpha |
B |
Eukaryote |
Crystal structure of the carboxyl-terminal domain of yeast DNA polymerase alpha in complex with its B subunit |
3FLO |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Human DNA polymerase iota in complex with T template DNA and incoming ddADP |
3GV5 |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Human DNA polymerase iota in complex with T template DNA and incoming dTTP |
3GV7 |
no |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Binary complex of human DNA polymerase iota with template U/T |
3H40 |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Human DNA polymerase iota in complex with T template DNA and incoming dGTP |
3GV8 |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA |
3HWT |
yes |
rcsb pdbsum |
Human Pol kappa |
Y |
Eukaryote |
Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion |
3IN5 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Binary complex of human DNA polymerase beta with a gapped DNA |
3ISB |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex |
3K59 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA |
3ISC |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch |
3ISD |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex |
3K57 |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex |
3K5L |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex |
3K58 |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex |
3K5M |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion |
3KHG |
yes |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-abasic DNA binary complex |
3K5N |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesion |
3KHH |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesion |
3KHR |
no |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion |
3KHL |
no |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II-normal DNA-dGTP ternary complex |
3MAQ |
yes |
rcsb pdbsum |
Taq pol I |
A |
Eubacterium |
LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP |
5KTQ |
no |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS |
3KTQ |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 |
7ICE |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site |
3HW8 |
yes |
rcsb pdbsum |
Pol lamba L277A/H511A/R514 |
X |
Eukaryote |
ternary complex of L277A, H511A, R514 mutant pol lambda bound to a 2 nucleotide gapped DNA substrate with a scrunched dA |
3HX0 |
yes |
rcsb pdbsum |
Bst |
A |
Eubacterium |
Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). |
3EZ5 |
no |
rcsb pdbsum |
Bst |
A |
Eubacterium |
Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) |
3EYZ |
yes |
rcsb pdbsum |
Bst |
A |
Eubacterium |
Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication |
1XC9 |
yes |
rcsb pdbsum |
Bst |
A |
Eubacterium |
Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site. |
1UA1 |
yes |
rcsb pdbsum |
Bst |
A |
Eubacterium |
Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase |
1UA0 |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP. |
1NK9 |
yes |
rcsb pdbsum |
Bst LF |
A |
Eubacterium |
8oxoguanine at the pre-insertion site of the polymerase active site |
1U45 |
yes |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS |
1QTM |
yes |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA |
4KTQ |
yes |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS |
1QSY |
yes |
rcsb pdbsum |
Klentaq |
A |
Eubacterium |
OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS |
2KTQ |
no |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site |
2FMS |
yes |
rcsb pdbsum |
Eco Pol III |
C |
Eubacterium |
Crystal structure of E. coli sliding clamp (beta) bound to a polymerase II peptide |
3D1E |
no |
rcsb pdbsum |
Eco Pol II |
B |
Eubacterium |
Crystal structure of E.coli Pol II |
3K5O |
no |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
crystal structure of a polymerase lambda variant with a dGTP analog opposite a templating T |
3PML |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P |
3LK9 |
yes |
rcsb pdbsum |
RB69 |
B |
Virus/Phage |
RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution |
3NCI |
yes |
rcsb pdbsum |
RB69 S565GY567A |
B |
Virus/Phage |
RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG |
3NHG |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site |
3PMN |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site |
3PNC |
yes |
rcsb pdbsum |
RB69 Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG |
3NDK |
yes |
rcsb pdbsum |
Mtu pol III |
C |
Eubacterium |
Crystal structure of DNA polymerase III sliding clamp |
3P16 |
no |
rcsb pdbsum |
RB69 D222A, D327A |
B |
Virus/Phage |
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol |
3RMC |
yes |
rcsb pdbsum |
RB69 D222A, D327A |
B |
Virus/Phage |
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol |
3RMB |
yes |
rcsb pdbsum |
RB69 D222A, D327A |
B |
Virus/Phage |
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol |
3RMA |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) |
9ICY |
yes |
rcsb pdbsum |
Dpo4 |
Y |
Archaeon |
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incoming dCTP |
3PW7 |
yes |
rcsb pdbsum |
RB69 L561AS565G/Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dTTP Opposite Difluorotoluene Nucleoside |
3QEP |
yes |
rcsb pdbsum |
RB69 L415AL561A/S565G/Y567A |
B |
Virus/Phage |
RB69 DNA Polymerase(L415A/L561A/S565G/Y567A) Ternary Complex with dUpCpp Opposite dA |
3SPY |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) |
9ICU |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 |
9ICT |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 |
9ICS |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota |
4EBE |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota |
4EBD |
yes |
rcsb pdbsum |
Human Pol iota |
Y |
Eukaryote |
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota |
4EBC |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 |
9ICV |
yes |
rcsb pdbsum |
DNA polymerase eta |
|
Eukaryote |
Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.5 (Na+ HEPES) with 1 Ca2+ ion |
4ED3 |
yes |
rcsb pdbsum |
Human Pol lamba |
X |
Eukaryote |
Crystal structure of the pre-catalytic ternary complex of polymerase lambda with a dATP analog opposite a templating T and an rCMP at the primer terminus. |
4FO6 |
yes |
rcsb pdbsum |
Dpo4 p2 |
Y |
Archaeon |
Crystal structure of Dpo4 in complex with S-MC-dADP opposite dT |
4GC7 |
yes |
rcsb pdbsum |
Dpo4 p2 |
Y |
Archaeon |
Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT |
4GC6 |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochlororomethylene triphosphate:binding of S-isomer |
4DOC |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochlororomethylene triphosphate: Stereoselective binding of R-isomer |
4DOB |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE |
9ICW |
yes |
rcsb pdbsum |
Human Pol beta |
X |
Eukaryote |
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA (NON GAPPED DNA ONLY) |
9ICX |
yes |
rcsb pdbsum |
RB69 D222AD327A |
B |
Virus/Phage |
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol |
3RMD |
yes |
rcsb pdbsum |
RB69 D222AD327A |
B |
Virus/Phage |
RB69 DNA Polymerase Ternary Complex with dUpCpp Opposite dA |
3SQ1 |
yes |
rcsb pdbsum |
HIV RT K103NY181C |
RT |
Virus/Phage |
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH A DIFLUOROMETHYLBENZOXAZOLE (DFMB) PYRIMIDINE THIOETHER DERIVATIVE, A NON-NUCLEOSIDE RT INHIBITOR (NNRTI) |
2YKN |
no |
rcsb pdbsum |
Human Pol eta |
Y |
Eukaryote |
Human DNA polymerase eta - DNA ternary complex: Reaction in the TG crystal at pH 7.0, Normal translocation |
4ED8 |
yes |
rcsb pdbsum |